The Protein Data Bank
Welcome to the PDB, the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data.
www.rcsb.org/pdb/   reviews

NAMD - Scalable Molecular Dynamics
NAMD is a parallel molecular dynamics code for large biomolecular systems. NAMD is free with source code.
www.ks.uiuc.edu/Research/namd/   reviews

Molecules in the Classroom/UMass Amherst
www.umass.edu/microbio/rasmol/rasclass.htm   reviews

Biomolecular & Biochemical Databases.
Biology Links | Biomolecular & Biochemical Databases | Access to Multiple Databases | DNA & RNA Sequences | DNA & RNA Motifs, Sites, etc | Protein Sequences | Protein Motifs & Patterns
mcb.harvard.edu/BioLinks/Sequences.html   reviews

AMMP Home Page
AMMP Home Page Welcome to AMMP AMMP is a modern full-featured molecular mechanics, dynamics and modeling program. It can manipulate both small molecules and macromolecules including proteins, nucleic acids and other polymers. In addition to standard features, like numerically stable molecular dynamics, fast multipole method for including all atoms in the calculation of long range potentials and ...
www.cs.gsu.edu/~cscrwh/ammp/ammp.html   reviews

EGO - A Program for Efficient Parallel Molecular Dynamics
EGO - A Program for Efficient Parallel Molecular Dynamics ...
www.lrz-muenchen.de/~heller/ego/egointro.html   reviews